Azimuth (Seurat reference mapping)
Classical/statistical scientific method · Confirm distribution and exact release
Azimuth (Seurat reference mapping) — cell-annotation / single-cell-reference-mapping
Research / method authors
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40 matching products · 40 products on page 1. Filters search the whole catalog.
Classical/statistical scientific method · Confirm distribution and exact release
Azimuth (Seurat reference mapping) — cell-annotation / single-cell-reference-mapping
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
Baysor — spatial-transcript-segmentation
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
BBKNN — single-cell-integration
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
CellRank — cell-fate-mapping
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
LIGER / rliger — single-cell-integration
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
Monocle 3 — cell-trajectory
Research / method authors
Research AI model / method · Research code or publication
Learns cell embeddings relating dissociated single-cell and spatial transcriptomics contexts.
Theis Lab
Classical/statistical scientific method · Confirm distribution and exact release
Proseg — spatial-transcript-segmentation
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
RCTD / spacexr — spatial-deconvolution / spatial-cell-type-mixture
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
SCENIC+ — enhancer-gene-regulatory-network-inference
Research / method authors
Research AI model / method · Research code or publication
Pretrained human scRNA foundation representations for task-specific analysis and classification.
BioMap
Classical/statistical scientific method · Confirm distribution and exact release
SingleR — cell-annotation
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
Symphony — single-cell-reference-mapping / cell-annotation
Research / method authors
Software Library (R / Python) · Open Source
Fast, sensitive and flexible integration of single-cell data
Broad Institute / Harvard Medical School (Raychaudhuri Lab)
Python Library · Open Source
Unified data framework and storage format for spatial multi-omics
scverse Consortium
R Software Package · Open Source
Inference and analysis of cell-cell communication networks from single-cell data
University of California, Irvine (Nie Lab)
Software Pipeline · Proprietary Freeware
The industry-standard analysis pipeline for Chromium single-cell sequencing
10x Genomics
Open Source Software · Open Source
Single-cell architectural surgery for reference atlas mapping without data sharing
Helmholtz Munich (Theis Lab)
Supporting software · Public code / project terms
Multimodal omics data handling and analysis
scverse / muon contributors
Research software / framework · Public code / project terms
Framework for single-cell perturbation analysis
scverse / Pertpy contributors
Supporting software · Public code / project terms
Interactive pipeline for spatial transcriptomics analysis
Saeys laboratory
Research software / model · Public code / project terms
Cell language modeling with cell-cell context
OmicsML / CellPLM authors
Research software / model · Public code / project terms
Transformer representations of single-cell transcriptomes
Theodoris laboratory and collaborators
Supporting software · Public code / project terms
Spatial multi-omics processing, analysis and visualization
Dries laboratory and collaborators
Research software / model · Public code / project terms
Pretrained language modeling for cell-type annotation
scBERT research authors
Research software / model · Public code / project terms
RNA velocity and cellular dynamics analysis
Theis laboratory / scVelo contributors
Research software / model · Public code / project terms
Foundation-model embeddings for single-cell expression
Stanford SNAP / UCE contributors
Research software / model · Public code
Bayesian mapping of cell types in spatial transcriptomics
cell2location contributors
Research software / model · Public code
Semi-automatic cell type classification
Teichmann Lab / CellTypist contributors
Research software / model · Public code
Predicting transcriptional perturbation outcomes
Stanford SNAP / GEARS authors
Supporting software · Public code
Reproducible automated cytometry gating
openCyto contributors
Research software / model · Public code
Subpopulation detection in single-cell data
Pe’er Lab / PhenoGraph contributors
Supporting software · Public code
Python toolkit for single-cell analysis
scverse / Scanpy contributors
Supporting software · Public code
Spatial single-cell analysis in Python
scverse / Squidpy contributors
Research software / model · Public code
Mapping single-cell expression into space
Broad Institute / Tangram contributors
Research software / model · Public code
Self-organizing maps for cytometry
FlowSOM contributors
Research software / model · Public research code
Foundation models for single-cell omics
Bo Wang Lab
Research software / model · Public code
Probabilistic models for single-cell analysis
scverse / scvi-tools contributors
