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Single-cell, Spatial & Cytometry · Cell Annotation

CellTypist

By Teichmann Lab / CellTypist contributors →

Semi-automatic cell type classification

Semi-automatic cell type classification. Reference labels and tissue coverage constrain predictions; inspect marker consistency.

Semi-automatic cell type classificationDocumented research workflow
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Overview

Semi-automatic cell type classification. Reference labels and tissue coverage constrain predictions; inspect marker consistency.

Information checked against an official source; not a hands-on test. Source · Last reviewed: 15/09/2026, 19:45:19

Key Features

  • Semi-automatic cell type classification
  • Documented research workflow

Academic Context & Research Evidence

Biological & Workflow Fit

Compute & Hardware
Dataset and implementation dependent; no configuration benchmarked
Licensing & Academic Use
Check the selected release, model and dependencies
Documented Evidence
Project documentation; not a local benchmark

Cite this Tool

Use this citation format when referencing CellTypist in scientific publications and benchmark papers.

@software{celltypist_2026,
  title = {{CellTypist}},
  author = {{Teichmann Lab / CellTypist contributors}},
  year = {2026},
  url = {https://github.com/Teichlab/celltypist},
  note = {Indexed on aibioatlas - AI for Biology and Drug Discovery}
}

Peer-Reviewed Literature & Preprints

Live scientific citations streamed from Europe PMC and PubMed for CellTypist.

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Technical / Product Information

Missing values mean the catalog has no recorded information. They do not mean a feature is absent.

Entry typeResearch software / model
Access modePublic code
AI roleMachine-learning classifier
Input dataSingle-cell gene expression and a selected reference model
Output dataPredicted cell-type labels
Licence conditionsCheck the selected release, model and dependencies
Commercial eligibilityNot independently confirmed
Compute requirementsDataset and implementation dependent; no configuration benchmarked
ValidationNot recorded
TypeNot recorded
Intended useNot recorded
CompatibilityNot recorded
LimitationsReference labels and tissue coverage constrain predictions; inspect marker consistency.
Evidence levelProject documentation; not a local benchmark
AvailabilityPublic research software
Price / accessSee project licence and access terms

Research fit & compatibility

No software–hardware integration has been verified for this entry yet. Explore documented research workflows.

Gallery & resources

No licensed product photograph recorded for CellTypist yet. Visit the official resource below for manufacturer imagery.

BEFORE YOU CHOOSE

Evaluate Single-cell, Spatial & Cytometry

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Alternatives

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FAQ

Where is this product available?

Public research software

How is pricing handled?

Prices reflect the source at its last check. Confirm current pricing and regional availability on the official site.

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Peer Reviews & Community Ratings

Feedback from researchers and computational biologists evaluating CellTypist.

5.0
★★★★★Based on 0 researcher evaluations
Biological Accuracy
4.8/5
Ease of Installation
4.3/5
Documentation & Code
4.6/5