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Compare biological models, docking engines, and computational workflows side-by-side. Filter by access model, compute footprint, and category to reach an actionable decision table in under a minute.
| Attribute | ＋ Add tool | |
|---|---|---|
| Category | Single-Cell & Spatial Biology | — |
| Subcategory | Single-Cell Processing Pipelines | — |
| Company | 10x Genomics | — |
| Access mode | Proprietary Freeware | — |
| Licence conditions | 10x Genomics End User License Agreement | — |
| Compute requirements | 64GB+ RAM, 16+ CPU cores (HPC / Linux workstation) | — |
| Biological application | Single-cell RNA-seq, single-cell ATAC-seq, and immune repertoire profiling | — |
| Research workflow | Raw Illumina BCL/FASTQ files -> aligned BAM and feature-barcode matrices | — |
| Evidence level | Standard protocol across thousands of published single-cell studies | — |
| Commercial eligibility | Free to download and use with 10x Genomics data | — |
| Price | Free to download for 10x Genomics data | — |
| Availability ⓘ | Available on 10x Genomics support portal | — |
| Features | Demultiplexing, barcode processing, and STAR alignment to reference genomes, Accurate cell-calling algorithms distinguishing intact cells from ambient RNA background, Support for 3' and 5' gene expression, immune profiling (VDJ), and feature barcoding, Automated web summary HTML reports with t-SNE/UMAP projections and sequencing QC metrics | — |
| Entry type | Software Pipeline | — |
| AI role | Demultiplexing & Quality Filtering | — |
| Input data | Not recorded | — |
| Output data | Not recorded | — |
| Validation | Not recorded | — |
| Type | Single-cell data processing pipeline | — |
| Intended use | Not recorded | — |
| Compatibility | Not recorded | — |
| Manufacturer | 10x Genomics | — |
| Integration evidence | https://www.10xgenomics.com/support/software/cell-ranger | — |
| Laboratory handoff | Matrices feed directly into Scanpy, Seurat, or scvi-tools downstream analyses | — |