AlphaGenome
Research AI model / method · Research code or publication
Predicts genomic regulatory tracks and predicted functional effects of noncoding DNA variants.
Google DeepMind
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共匹配到 34 款工具 · 本页显示第 1 页中的 34 款. 筛选条件将在整个目录中生效。
Research AI model / method · Research code or publication
Predicts genomic regulatory tracks and predicted functional effects of noncoding DNA variants.
Google DeepMind
Classical/statistical scientific method · Confirm distribution and exact release
bcftools — germline-small-variant-calling / variant-calling
Research / method authors
Source-scoped research method · Confirm distribution and exact release
CADD — missense-pathogenicity-prioritization / regulatory-variant-prioritization
Research / method authors
Source-scoped research method · Confirm distribution and exact release
EVE — missense-pathogenicity-prioritization
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
GATK HaplotypeCaller — germline-small-variant-calling / variant-calling
Research / method authors
Classical/statistical scientific method · Confirm distribution and exact release
GATK Mutect2 — somatic-small-variant-calling
Research / method authors
Source-scoped research method · Confirm distribution and exact release
Pangolin — splice-site-effect-prediction
Research / method authors
Source-scoped research method · Confirm distribution and exact release
REVEL — missense-pathogenicity-prioritization
Research / method authors
Open Source Model · Open Source
7-billion parameter long-context genomic transformer predicting and generating whole operons and plasmids
Arc Institute & Stanford University
Laboratory Hardware · Commercial Purchase
Intelligent automated liquid handling workstation with multi-channel and span-8 pipetting
Beckman Coulter Life Sciences
AI Model · Open Source
Bi-directional state space model for long-range DNA sequence modeling
Stanford University & Princeton University
AI Model & Database · Open Access for Research
3D deep learning for human rare disease and clinical variant interpretation
Illumina Artificial Intelligence Lab
Open Source Software · Open Source
Python-based workflow management engine for reproducible data analysis
Snakemake Community (Köster Lab)
AI Model & Database · Open Access (Research)
Catalog of 71 million human missense mutations classified for clinical pathogenicity
Google DeepMind
Software Pipeline · Proprietary Freeware
The industry-standard analysis pipeline for Chromium single-cell sequencing
10x Genomics
Software Tool · Open Source
Transformer-based neural consensus caller for Pacific Biosciences HiFi sequencing
Google Health & PacBio
AI Model · Open Source
Long-range genomic foundation model handling context lengths up to 1 million base pairs
Stanford University (Hazy Research)
Cloud Platform · Pay-as-you-go Cloud Compute
Scalable biomedical research platform for secure genomic and clinical data analysis
Broad Institute, Microsoft & Verily
AI Model · Open Source
Protein language models trained on diverse evolutionary sequences
Salesforce AI Research
Research software / framework · Public code / project terms
Prediction of RNA-seq coverage from DNA sequence
Calico / Borzoi authors
Research software / framework · Public code / project terms
Base-resolution neural modeling of functional genomics
Kundaje laboratory
Research software / framework · Public code / project terms
Bias-aware deep learning of chromatin accessibility
Kundaje laboratory
Research software / model · Public code / project terms
Neural prediction of regulatory activity from sequence
Calico / Basenji contributors
Research software / model · Public code / project terms
Multi-species DNA sequence representation learning
MAGICS Lab / DNABERT-2 authors
Research software / model · Public code / project terms
Sequence-based prediction of gene-regulatory signals
Google DeepMind
Research software / model · Public code / project terms
Long-context DNA language modeling
Arc Institute / Evo contributors
Research software / model · Public code / project terms
Foundation models for genomic sequence representation
InstaDeep and collaborators
Research software / model · Public code / project terms
Deep-learning prediction of splice-altering variants
Illumina
Research software / framework · Public code
Basecalling for Oxford Nanopore sequencing
Oxford Nanopore Technologies
Research software / framework · Public code
Neural consensus polishing for nanopore data
Oxford Nanopore Technologies
Research software / framework · Public code
Deep-learning long-read variant calling
HKU BAL / Clair3 contributors
