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Compare biological models, docking engines, and computational workflows side-by-side. Filter by access model, compute footprint, and category to reach an actionable decision table in under a minute.
| Attribute | ＋ Add tool | |
|---|---|---|
| Category | Research Imaging & Microscopy | — |
| Subcategory | Digital Pathology & Whole-Slide Analysis | — |
| Company | University of Edinburgh | — |
| Access mode | Open Source | — |
| Licence conditions | GPL-3.0 | — |
| Compute requirements | Standard desktop / workstation (multi-core CPU, optional GPU for deep learning) | — |
| Biological application | Oncology biomarker quantification, spatial histology analysis, and clinical trials | — |
| Research workflow | Whole-slide image -> cell segmentation -> phenotyping -> spatial biomarker scoring | — |
| Evidence level | Peer-reviewed research (Scientific Reports 2017) with thousands of citations | — |
| Commercial eligibility | Permissive open source release | — |
| Price | Free Open Source | — |
| Availability ⓘ | Available for Windows, macOS, and Linux | — |
| Features | High-performance whole-slide image viewing and annotation across gigapixel files, Machine learning tissue classification (tumor vs stroma vs necrosis), Integration with StarDist and Cellpose for deep learning cell and nuclear segmentation, Extensive scripting API in Groovy and Python for automated cohort analysis | — |
| Entry type | Open Source Software | — |
| AI role | Deep Learning Image Segmentation | — |
| Input data | Not recorded | — |
| Output data | Not recorded | — |
| Validation | Not recorded | — |
| Type | Digital pathology bioimage analysis platform | — |
| Intended use | Not recorded | — |
| Compatibility | Not recorded | — |
| Manufacturer | University of Edinburgh (Bankhead Lab) | — |
| Integration evidence | https://qupath.github.io | — |
| Laboratory handoff | Correlates histological features with genomic data and patient survival curves | — |