Loading BioAtlas...
Loading BioAtlas...
Compare biological models, docking engines, and computational workflows side-by-side. Filter by access model, compute footprint, and category to reach an actionable decision table in under a minute.
| Attribute | ＋ Add tool | |||||
|---|---|---|---|---|---|---|
| Category | Single-cell, Spatial & Cytometry | Single-cell, Spatial & Cytometry | Single-cell, Spatial & Cytometry | Single-cell, Spatial & Cytometry | Single-cell, Spatial & Cytometry | — |
| Subcategory | Cytometry | Conventional or Statistical Baselines | Conventional or Statistical Baselines | Conventional or Statistical Baselines | Conventional or Statistical Baselines | — |
| Company | openCyto contributors | Research / method authors | Research / method authors | Research / method authors | Research / method authors | — |
| Access mode | Public code | Confirm distribution and exact release | Confirm distribution and exact release | Confirm distribution and exact release | Confirm distribution and exact release | — |
| Licence conditions | Check the selected release, model and dependencies | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | — |
| Compute requirements | Dataset and implementation dependent; no configuration benchmarked | Version and data dependent | Version and data dependent | Version and data dependent | Version and data dependent | — |
| Biological application | Not recorded | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Research workflow | Not recorded | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Evidence level | Project documentation; not a local benchmark | OFFICIAL_DOCUMENTATION | PEER_REVIEWED_METHOD_OR_CONFERENCE | PEER_REVIEWED_METHOD_OR_CONFERENCE | PEER_REVIEWED_METHOD_OR_CONFERENCE | — |
| Commercial eligibility | Not independently confirmed | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | — |
| Price | See project licence and access terms | Verify access and licence | Verify access and licence | Verify access and licence | Verify access and licence | — |
| Availability ⓘ | Public research software | Method paper or official documentation | Method paper or official documentation | Method paper or official documentation | Method paper or official documentation | — |
| Features | Reproducible automated cytometry gating, Documented research workflow | Azimuth (Seurat reference mapping) scientific method, Compatible single-cell expression matrix and named atlas reference, Anchor-based reference map and predicted cell labels | Baysor scientific method, Subcellular in-situ transcript positions and optional cell stain masks, Spatial transcript-informed cell boundaries | BBKNN scientific method, Single-cell latent-space representation and batch labels, Balanced neighbor graph for downstream analysis | CellRank scientific method, Single-cell trajectories, directional velocity or related transition kernels, Terminal state and fate probability hypotheses | — |
| Entry type | Supporting software | Classical/statistical scientific method | Classical/statistical scientific method | Classical/statistical scientific method | Classical/statistical scientific method | — |
| AI role | Supporting automation toolkit | NON_AI_REFERENCE | NON_AI_STATISTICAL | NON_AI_STATISTICAL | NON_AI_STATISTICAL | — |
| Input data | Cytometry data and gating templates | Compatible single-cell expression matrix and named atlas reference | Subcellular in-situ transcript positions and optional cell stain masks | Single-cell latent-space representation and batch labels | Single-cell trajectories, directional velocity or related transition kernels | — |
| Output data | Gated cell populations | Anchor-based reference map and predicted cell labels | Spatial transcript-informed cell boundaries | Balanced neighbor graph for downstream analysis | Terminal state and fate probability hypotheses | — |
| Validation | Not recorded | Published method scope; no independent BioAtlas execution or benchmark | Published method scope; no independent BioAtlas execution or benchmark | Published method scope; no independent BioAtlas execution or benchmark | Published method scope; no independent BioAtlas execution or benchmark | — |
| Type | Not recorded | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Intended use | Not recorded | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Compatibility | Not recorded | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Limitations | Automated gating does not replace compensation, controls or expert review. | Not recorded | Not recorded | Not recorded | Not recorded | — |