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Compare biological models, docking engines, and computational workflows side-by-side. Filter by access model, compute footprint, and category to reach an actionable decision table in under a minute.
| Attribute | ＋ Add tool | |||||
|---|---|---|---|---|---|---|
| Category | Genomics & Bioinformatics | Genomics & Bioinformatics | Genomics & Bioinformatics | Genomics & Bioinformatics | Genomics & Bioinformatics | — |
| Subcategory | Genomic Foundation Models | Regulatory Genomics | Conventional or Statistical Baselines | Research AI Methods | Research AI Methods | — |
| Company | InstaDeep and collaborators | Google DeepMind | Research / method authors | Research / method authors | Research / method authors | — |
| Access mode | Public code / project terms | Research code or publication | Confirm distribution and exact release | Confirm distribution and exact release | Confirm distribution and exact release | — |
| Licence conditions | Review the linked release, model weights, datasets and service terms separately | Check code and model weights separately | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | — |
| Compute requirements | Consult linked installation guidance; workload dependent | Check selected checkpoint and runtime; no GPU catalog recommendation | Version and data dependent | Version and data dependent | Version and data dependent | — |
| Biological application | Not recorded | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Research workflow | Not recorded | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Evidence level | Project or provider documentation; no local performance benchmark | Peer-reviewed primary method | PEER_REVIEWED_METHOD_OR_CONFERENCE | PEER_REVIEWED_METHOD_OR_CONFERENCE | PEER_REVIEWED_METHOD_OR_CONFERENCE | — |
| Commercial eligibility | Not independently confirmed | Unknown, requires audit | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | — |
| Price | See project terms; compute costs may apply | Check selected model licence | Verify access and licence | Verify access and licence | Verify access and licence | — |
| Availability ⓘ | See project access and maintenance status | Public research method/code | Method paper or official documentation | Method paper or official documentation | Method paper or official documentation | — |
| Features | Foundation models for genomic sequence representation, Input: Nucleotide sequences, Output: Sequence embeddings and fine-tuned predictions | Predicts genomic regulatory tracks and predicted functional effects of noncoding DNA variants., Genomic regulatory track, sequence-variant contrast | bcftools scientific method, Reference genome with aligned short-read input and correct ploidy assumptions, VCF/BCF variant calls and variants QC operations | CADD scientific method, Human genomic variant coordinates mapped to correct reference assembly, Combined annotation-dependent depletion scores | EVE scientific method, Protein family homolog alignment and compatible human missense variants, Evolutionary deep generative variant effect estimate | — |
| Entry type | Research software / model | Research AI model / method | Classical/statistical scientific method | Source-scoped research method | Source-scoped research method | — |
| AI role | Scientific machine learning | Published biomedical AI method | NON_AI_STATISTICAL | ENSEMBLE_ML | DEEP_LEARNING | — |
| Input data | Nucleotide sequences | DNA sequence interval; alleles and tissue/assay ontology | Reference genome with aligned short-read input and correct ploidy assumptions | Human genomic variant coordinates mapped to correct reference assembly | Protein family homolog alignment and compatible human missense variants | — |
| Output data | Sequence embeddings and fine-tuned predictions | Genomic regulatory track; sequence-variant contrast | VCF/BCF variant calls and variants QC operations | Combined annotation-dependent depletion scores | Evolutionary deep generative variant effect estimate | — |
| Validation | Evaluate on representative data; no clinical suitability established | Requires independent dataset-specific evaluation | Published method scope; no independent BioAtlas execution or benchmark | Published method scope; no independent BioAtlas execution or benchmark | Published method scope; no independent BioAtlas execution or benchmark | — |
| Type | Not recorded | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Intended use | Biological and pharmaceutical research | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Compatibility | Not recorded | Not recorded | Not recorded | Not recorded | Not recorded | — |
| Limitations | Choose the correct checkpoint, tokenizer and species context; code and model terms can differ. | Not recorded | Not recorded | Not recorded | Not recorded | — |