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Genomics & Bioinformatics · Regulatory Genomics

Basenji

By Calico / Basenji contributors →

Neural prediction of regulatory activity from sequence

Neural prediction of regulatory activity from sequence. Assay, organism and reference-genome mismatches can invalidate interpretations.

Neural prediction of regulatory activity from sequenceInput: DNA sequence windows and training signal tracksOutput: Predicted genomic activity profiles
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Overview

Neural prediction of regulatory activity from sequence. Assay, organism and reference-genome mismatches can invalidate interpretations.

Information checked against an official source; not a hands-on test. Source · Last reviewed: 16/09/2026, 17:33:40

Key Features

  • Neural prediction of regulatory activity from sequence
  • Input: DNA sequence windows and training signal tracks
  • Output: Predicted genomic activity profiles

Academic Context & Research Evidence

Biological & Workflow Fit

Compute & Hardware
Consult linked installation guidance; workload dependent
Licensing & Academic Use
Review the linked release, model weights, datasets and service terms separately
Documented Evidence
Project or provider documentation; no local performance benchmark

Cite this Tool

Use this citation format when referencing Basenji in scientific publications and benchmark papers.

@software{basenji_2026,
  title = {{Basenji}},
  author = {{Calico / Basenji contributors}},
  year = {2026},
  url = {https://github.com/calico/basenji},
  note = {Indexed on aibioatlas - AI for Biology and Drug Discovery}
}

Peer-Reviewed Literature & Preprints

Live scientific citations streamed from Europe PMC and PubMed for Basenji.

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Technical / Product Information

Missing values mean the catalog has no recorded information. They do not mean a feature is absent.

Entry typeResearch software / model
Access modePublic code / project terms
AI roleScientific machine learning
Input dataDNA sequence windows and training signal tracks
Output dataPredicted genomic activity profiles
Licence conditionsReview the linked release, model weights, datasets and service terms separately
Commercial eligibilityNot independently confirmed
Compute requirementsConsult linked installation guidance; workload dependent
ValidationEvaluate on representative data; no clinical suitability established
TypeNot recorded
Intended useBiological and pharmaceutical research
CompatibilityNot recorded
LimitationsAssay, organism and reference-genome mismatches can invalidate interpretations.
Evidence levelProject or provider documentation; no local performance benchmark
AvailabilitySee project access and maintenance status
Price / accessSee project terms; compute costs may apply

Research fit & compatibility

No software–hardware integration has been verified for this entry yet. Explore documented research workflows.

Gallery & resources

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FAQ

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Peer Reviews & Community Ratings

Feedback from researchers and computational biologists evaluating Basenji.

5.0
★★★★★Based on 0 researcher evaluations
Biological Accuracy
4.8/5
Ease of Installation
4.3/5
Documentation & Code
4.6/5