از پرسش پژوهشی تا انتخاب ابزار
طراحی گردش‌کار تحقیقاتی
پیوند دادن نرم‌افزار، زیرساخت پردازشی و مراحل آزمایشگاهی با استناد به شواهد مستند علمی. گردش‌کار یک راهنمای برنامه‌ریزی است، نه یک پروتکل آزمایشگاهی اعتبارسنجی‌شده.
Research workflow suitability and Decision Passport
The previous fixed-template workflow scorer cannot establish comparative scientific suitability. For a task-specific assessment, enter the biological objective, the actual sample/data modalities and method constraints in the offline Decision Lab. Select the reviewed method deliberately and compare it against a mandatory non-AI baseline.
Open scientific Decision LabHistorical workflow templates are examples, not validated executable pipelines, clinical decisions or ranked model recommendations.
ستون‌های اصلی گردش‌کارهای BIOAI
طرح‌های مرجع و استاندارد زیست‌شناسی محاسباتی
6 مسیر مستندسازی‌شده · شواهد و یادداشت‌های ثبت‌شده سپتامبر ۲۰۲۶. واجد شرایط بودن تجاری برای تمام مسیرها تأیید مستقل نشده است.
Provider-tested configuration
Predict biomolecular structures
AlphaFold 3 documentation lists a single H100 80 GB as an officially supported inference configuration. Other H100 variants are not established by this evidence.
۱ · ورودی‌ها
Biomolecular sequences and supported molecular inputs, with sequence-search preparation.
۲ · نرم‌افزار و سخت‌افزار
H100 80 GB; CPU/RAM and sequence databases are also required. Larger inputs can require configuration changes.
۳ · خروجی‌ها
Predicted structures for scientific review.
۴ · تحویل به آزمایشگاه
Editorial next step: select an appropriate structural or functional validation assay with the research team. No direct instrument integration has been verified.
مجوز و استفاده تجاری
Code and model parameters have separate terms. Parameter access must be obtained from the provider; commercial eligibility is not established here.
عوامل هزینه‌ای
GPU access, CPU preparation, sequence storage and researcher time; no live price estimate.
محدودیت‌های شواهد
Hardware support is not evidence of accuracy for a particular biological target. No local benchmark was run.
مشاهده شواهد و مقاله اصلی ↗
Provider implementation example
Run protein-folding workflows in the cloud
AWS documents AlphaFold2 and OpenFold workflows on SageMaker. This evidence does not establish AlphaFold 3 compatibility.
۱ · ورودی‌ها
Protein sequences and the chosen workflow's reference data.
۲ · نرم‌افزار و سخت‌افزار
Workflow-specific cloud instances, storage and orchestration; verify current instance availability and dependencies.
۳ · خروجی‌ها
Structure predictions and tracked experiments.
۴ · تحویل به آزمایشگاه
Editorial next step: choose experimental validation based on the biological question. No automatic laboratory handoff is documented here.
مجوز و استفاده تجاری
AWS service terms and each model/data licence must be evaluated separately.
عوامل هزینه‌ای
Instance runtime, storage, data transfer and idle resources; confirm regional prices.
محدودیت‌های شواهد
Historical implementation example; not a guarantee that the original deployment instructions still run unchanged.
مشاهده شواهد و مقاله اصلی ↗
Manufacturer-listed research
Connect cellular imaging to machine-learning analysis
Revvity lists research combining Opera Phenix imaging with machine learning. AI analysis is a workflow component, not assumed to be included in every instrument configuration.
۱ · ورودی‌ها
Prepared biological samples and an imaging assay.
۲ · نرم‌افزار و سخت‌افزار
Analysis workstation or server requirements depend on the selected pipeline and image volume; not yet verified.
۳ · خروجی‌ها
Cellular images and analysis-dependent measurements.
۴ · تحویل به آزمایشگاه
Imaging is the laboratory step. Confirm assay design, controls, sample formats and export compatibility before linking an analysis tool.
مجوز و استفاده تجاری
Instrument, analysis software and model licences require separate confirmation.
عوامل هزینه‌ای
Instrument quotation, maintenance, consumables, analysis software and compute.
محدودیت‌های شواهد
Publication-list evidence, not an independently reproduced benchmark or verified plug-and-play integration.
مشاهده شواهد و مقاله اصلی ↗
Project documentation; editorial evaluation plan
Evaluate cell segmentation
Compare these alternative analysis tools on the same images; no cross-tool interoperability is asserted.
۱ · ورودی‌ها
Microscopy images with representative expert annotations
۲ · نرم‌افزار و سخت‌افزار
Select the release and dataset size before sizing CPU, GPU, RAM and storage; no hardware configuration verified here.
۳ · خروجی‌ها
Segmentation masks or workflow-specific classifications
۴ · تحویل به آزمایشگاه
Editorial next step: review results against independent annotations, truth sets or relevant experiments. No automatic laboratory integration is established.
مجوز و استفاده تجاری
Confirm the selected code, model and data terms separately.
عوامل هزینه‌ای
Compute, storage, annotation and researcher time; no current price estimate.
محدودیت‌های شواهد
Tools are not locally benchmarked; this path describes an evaluation plan and does not assert clinical validity or superiority.
مشاهده شواهد و مقاله اصلی ↗
Project documentation; editorial evaluation plan
Evaluate single-cell representations
These are alternative research approaches. Batch effects and held-out donor evaluation must be considered; a direct pipeline between them is not verified.
۱ · ورودی‌ها
Quality-controlled single-cell expression data
۲ · نرم‌افزار و سخت‌افزار
Select the release and dataset size before sizing CPU, GPU, RAM and storage; no hardware configuration verified here.
۳ · خروجی‌ها
Model-specific embeddings or downstream predictions
۴ · تحویل به آزمایشگاه
Editorial next step: review results against independent annotations, truth sets or relevant experiments. No automatic laboratory integration is established.
مجوز و استفاده تجاری
Confirm the selected code, model and data terms separately.
عوامل هزینه‌ای
Compute, storage, annotation and researcher time; no current price estimate.
محدودیت‌های شواهد
Tools are not locally benchmarked; this path describes an evaluation plan and does not assert clinical validity or superiority.
مشاهده شواهد و مقاله اصلی ↗
Project documentation; editorial evaluation plan
Evaluate a variant-calling pipeline
Choose the sequencing-platform model and compare to appropriate reference truth data; this is not clinical interpretation.
۱ · ورودی‌ها
Aligned reads, reference genome and platform-matched model
۲ · نرم‌افزار و سخت‌افزار
Select the release and dataset size before sizing CPU, GPU, RAM and storage; no hardware configuration verified here.
۳ · خروجی‌ها
Genetic variant calls
۴ · تحویل به آزمایشگاه
Editorial next step: review results against independent annotations, truth sets or relevant experiments. No automatic laboratory integration is established.
مجوز و استفاده تجاری
Confirm the selected code, model and data terms separately.
عوامل هزینه‌ای
Compute, storage, annotation and researcher time; no current price estimate.
محدودیت‌های شواهد
Tools are not locally benchmarked; this path describes an evaluation plan and does not assert clinical validity or superiority.
مشاهده شواهد و مقاله اصلی ↗
