Scanpy

Biological & Workflow Fit

Compute & Hardware

Dataset and implementation dependent; no configuration benchmarked

Licensing & Academic Use

Check the selected release, model and dependencies

Documented Evidence

Project documentation; not a local benchmark

Use this citation format when referencing Scanpy in scientific publications and benchmark papers.

@software{scanpy_2026,
  title = {{Scanpy}},
  author = {{scverse / Scanpy contributors}},
  year = {2026},
  url = {https://scanpy.readthedocs.io/en/stable/},
  note = {Indexed on aibioatlas - AI for Biology and Drug Discovery}
}