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ilastik - Research Imaging & Structural Analysis | aibioatlas | aibioatlas

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ilastik Scientific Architecture

ilastik Scientific Architecture · ilastik team

Research Imaging & Structural Analysis · Cell Segmentation

ilastik

开发机构 ilastik team →

Interactive machine learning for image analysis

Interactive image analysis software with workflows such as pixel classification. Users provide annotations and inspect predictions for their own images.

Interactive machine learning for image analysisDocumented research workflow

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报告错误数据或申请机构认证

概览介绍

Interactive image analysis software with workflows such as pixel classification. Users provide annotations and inspect predictions for their own images.

信息已比对权威文献或官方白皮书；非实验性跑分。权威出处 · 最后核对: 14/09/2026, 18:31:56 UTC

核心功能特性

Interactive machine learning for image analysis
Documented research workflow

Interactive 3D Illustration

Biological Architecture (Stylized Ribbon)

Default view is a stylized demonstration ribbon. Enter any 4-letter RCSB PDB accession code above to stream real atomic coordinates.

⇄ Drag to rotate · Scroll to zoom

Illustrative Confidence Gradient:

>90 High / Low B 70-90 Confident 50-70 Low <50 Very low / High B

Academic Context & Research Evidence

Biological & Workflow Fit

Compute & Hardware: Version and workload dependent; not independently benchmarked
Licensing & Academic Use: Check distribution and dependency licences
Documented Evidence: Project documentation; no local benchmark

Cite this Tool

Use this citation format when referencing ilastik in scientific publications and benchmark papers.

@software{ilastik_2026,
  title = {{ilastik}},
  author = {{ilastik team}},
  year = {2026},
  url = {https://www.ilastik.org/},
  note = {Indexed on aibioatlas - AI for Biology and Drug Discovery}
}

Peer-Reviewed Literature & Preprints

Live scientific citations queried from Europe PMC and PubMed for ilastik.

⏳ Querying Europe PMC & PubMed for indexed publications...

技术参数与产品规格

Missing values mean the catalog has no recorded information. They do not mean a feature is absent.

Entry typeResearch software / model

Access modePublic software

AI roleMachine-learning software

Input dataImages and user annotations

Output dataWorkflow-specific classifications and measurements

Licence conditionsCheck distribution and dependency licences

Commercial eligibilityConfirm exact code, weights and data terms

Compute requirementsVersion and workload dependent; not independently benchmarked

ValidationEvaluate on representative held-out data

TypeNot recorded

Intended useNot recorded

CompatibilityNot recorded

Evidence levelProject documentation; no local benchmark

AvailabilityPublic software

Price / accessSee access and licence terms

Research fit & compatibility

Evaluate cell segmentation →

Project documentation; editorial evaluation plan · Compare these alternative analysis tools on the same images; no cross-tool interoperability is asserted.

Compute: Select the release and dataset size before sizing CPU, GPU, RAM and storage; no hardware configuration verified here.
Licence & commercial use: Confirm the selected code, model and data terms separately.
Evidence limitations: Tools are not locally benchmarked; this path describes an evaluation plan and does not assert clinical validity or superiority.

Read supporting evidence ↗

Gallery & resources

ilastik Scientific Architecture

ilastik Scientific Architecture · Credit: ilastik team · Open original ↗

Research and editorial use Source & attribution ↗ License ↗

Resource: Project documentation ↗ · ilastik team

BEFORE YOU CHOOSE

Evaluate Research Imaging & Structural Analysis

Which input, output and scientific task does the selected version support?
Is this a model, supporting tool, commercial platform or research prototype?
Verify the code, weights, data licence and independent validation before selecting a workflow.

Selection guide →Find alternatives →

竞品替代

同一科学领域的同类算法与工具。

CRYO-EM • MICROSCOPY ANALYSIS

CellProfiler

Research Imaging & Structural Analysis

Conventional or Statistical Baselines

CellProfiler

Classical/statistical scientific method · Confirm distribution and exact release

CellProfiler — cell-segmentation / classical-microscopy-measurement

Research / method authors

⚖️ 与同类替代工具对比

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CRYO-EM • MICROSCOPY ANALYSIS

CellSAM

Research Imaging & Structural Analysis

Cell Segmentation

CellSAM

Research AI model / method · Research code or publication

Automated cell instance segmentation using detector and Segment Anything models for supported microscopy.

Van Valen Lab

GitHub ↗学术论文 ↗

⚖️ 与同类替代工具对比

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CRYO-EM • MICROSCOPY ANALYSIS

H-Optimus-0

Research Imaging & Structural Analysis

Research AI Methods

H-Optimus-0

Source-scoped research method · Confirm distribution and exact release

H-Optimus-0 — pathology-tile-embedding

Research / method authors

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CRYO-EM • MICROSCOPY ANALYSIS

μSAM

Research Imaging & Structural Analysis

Cell Segmentation

μSAM

Research AI model / method · Research code or publication

Microscopy-finetuned Segment Anything models and napari workflows for prompt-assisted and automatic segme

Pape Lab

GitHub ↗学术论文 ↗

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最新研究动态

暂无与此工具关联的已验证学术动态。

浏览全部生物AI动态 →

常见问题解答

该工具在哪些平台或地区可用？

Public software

商业授权与费用如何计算？

费用根据官方最近一次公布的说明整理。请在官方网站确认最新报价与学术折扣。

Peer Reviews & Community Ratings

Feedback from researchers and computational biologists evaluating ilastik.

No peer reviews submitted yet for ilastik.

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