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Confronta modelli biologici, motori di docking e flussi di calcolo affiancati. Filtra per modello di accesso, impronta di calcolo e categoria per ottenere una tabella decisionale attuabile in meno di un minuto.
| Attributo | ＋ Aggiungi strumento | |||
|---|---|---|---|---|
| Category | Single-Cell & Spatial Biology | Single-cell, Spatial & Cytometry | Single-cell, Spatial & Cytometry | — |
| Subcategory | Single-Cell Processing Pipelines | Conventional or Statistical Baselines | Conventional or Statistical Baselines | — |
| Company | 10x Genomics | Research / method authors | Research / method authors | — |
| Access mode | Proprietary Freeware | Confirm distribution and exact release | Confirm distribution and exact release | — |
| Licence conditions | 10x Genomics End User License Agreement | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | — |
| Compute requirements | 64GB+ RAM, 16+ CPU cores (HPC / Linux workstation) | Version and data dependent | Version and data dependent | — |
| Biological application | Single-cell RNA-seq, single-cell ATAC-seq, and immune repertoire profiling | Non registrato | Non registrato | — |
| Research workflow | Raw Illumina BCL/FASTQ files -> aligned BAM and feature-barcode matrices | Non registrato | Non registrato | — |
| Evidence level | Standard protocol across thousands of published single-cell studies | OFFICIAL_DOCUMENTATION | PEER_REVIEWED_METHOD_OR_CONFERENCE | — |
| Commercial eligibility | Free to download and use with 10x Genomics data | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | — |
| Price | Free to download for 10x Genomics data | Verify access and licence | Verify access and licence | — |
| Availability ⓘ | Available on 10x Genomics support portal | Method paper or official documentation | Method paper or official documentation | — |
| Features | Demultiplexing, barcode processing, and STAR alignment to reference genomes, Accurate cell-calling algorithms distinguishing intact cells from ambient RNA background, Support for 3' and 5' gene expression, immune profiling (VDJ), and feature barcoding, Automated web summary HTML reports with t-SNE/UMAP projections and sequencing QC metrics | Azimuth (Seurat reference mapping) scientific method, Compatible single-cell expression matrix and named atlas reference, Anchor-based reference map and predicted cell labels | Baysor scientific method, Subcellular in-situ transcript positions and optional cell stain masks, Spatial transcript-informed cell boundaries | — |
| Entry type | Software Pipeline | Classical/statistical scientific method | Classical/statistical scientific method | — |
| AI role | Demultiplexing & Quality Filtering | NON_AI_REFERENCE | NON_AI_STATISTICAL | — |
| Input data | Non registrato | Compatible single-cell expression matrix and named atlas reference | Subcellular in-situ transcript positions and optional cell stain masks | — |
| Output data | Non registrato | Anchor-based reference map and predicted cell labels | Spatial transcript-informed cell boundaries | — |
| Validation | Non registrato | Published method scope; no independent BioAtlas execution or benchmark | Published method scope; no independent BioAtlas execution or benchmark | — |
| Type | Single-cell data processing pipeline | Non registrato | Non registrato | — |
| Intended use | Non registrato | Non registrato | Non registrato | — |
| Compatibility | Non registrato | Non registrato | Non registrato | — |
| Manufacturer | 10x Genomics | Non registrato | Non registrato | — |
| Integration evidence | https://www.10xgenomics.com/support/software/cell-ranger | Non registrato | Non registrato | — |
| Laboratory handoff | Matrices feed directly into Scanpy, Seurat, or scvi-tools downstream analyses | Non registrato | Non registrato | — |