Loading BioAtlas...
Loading BioAtlas...
Comparez modèles biologiques, moteurs de docking et flux de calcul côte à côte. Filtrez par modèle d'accès, empreinte de calcul et catégorie pour parvenir à une table de décision exploitable en moins d'une minute.
| Attribut | ＋ Ajouter un outil | |||
|---|---|---|---|---|
| Category | Research Tooling & Frameworks | Scientific ML Libraries & Supporting Tools | Scientific ML Libraries & Supporting Tools | — |
| Subcategory | Computational Biology Libraries | Conventional or Statistical Baselines | Conventional or Statistical Baselines | — |
| Company | Open Bioinformatics Foundation (OBF) | Research / method authors | Research / method authors | — |
| Access mode | Open Source | Confirm distribution and exact release | Confirm distribution and exact release | — |
| Licence conditions | Biopython License Agreement (BSD-like) | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | — |
| Compute requirements | Standard Python environment (CPU) | Version and data dependent | Version and data dependent | — |
| Biological application | Sequence analysis, structural bioinformatics, and data preprocessing for AI pipelines | Non enregistré | Non enregistré | — |
| Research workflow | Data loading, format conversion, and feature extraction for machine learning models | Non enregistré | Non enregistré | — |
| Evidence level | Foundational library cited in over 10,000 biological publications | PEER_REVIEWED_METHOD_OR_CONFERENCE | PEER_REVIEWED_METHOD_OR_CONFERENCE | — |
| Commercial eligibility | Permissive open source license | NOT_INDEPENDENTLY_AUDITED | NOT_INDEPENDENTLY_AUDITED | — |
| Price | Free Open Source | Verify access and licence | Verify access and licence | — |
| Availability ⓘ | Available via PyPI and Conda | Method paper or official documentation | Method paper or official documentation | — |
| Features | Comprehensive parsers for standard biological file formats (FASTA, GenBank, PDB, mmCIF, BLAST), Seq and SeqRecord objects for DNA, RNA, and protein sequence translation and motif searching, Bio.PDB module for parsing, analyzing, and transforming 3D macromolecular structures, Interfaces to common bioinformatics programs (NCBI BLAST, ClustalW, Muscle) | HMMER 3 scientific method, Query sequences or profile HMM and sequence database, Profile HMM hits and statistical homology significance | MMseqs2 scientific method, Amino acid queries and reference sequence database, Sequence matches, clusters and alignment results | — |
| Entry type | Python Library | Classical/statistical scientific method | Classical/statistical scientific method | — |
| AI role | Data Ingestion & Feature Engineering | NON_AI_CLASSICAL | NON_AI_CLASSICAL | — |
| Input data | Non enregistré | Query sequences or profile HMM and sequence database | Amino acid queries and reference sequence database | — |
| Output data | Non enregistré | Profile HMM hits and statistical homology significance | Sequence matches, clusters and alignment results | — |
| Validation | Non enregistré | Published method scope; no independent BioAtlas execution or benchmark | Published method scope; no independent BioAtlas execution or benchmark | — |
| Type | Python computational biology library | Non enregistré | Non enregistré | — |
| Intended use | Non enregistré | Non enregistré | Non enregistré | — |
| Compatibility | Non enregistré | Non enregistré | Non enregistré | — |
| Manufacturer | Biopython contributors / OBF | Non enregistré | Non enregistré | — |
| Integration evidence | https://biopython.org | Non enregistré | Non enregistré | — |
| Laboratory handoff | Prepares sequence data for primer design and synthesis ordering | Non enregistré | Non enregistré | — |