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| Atributo | ＋ Añadir herramienta | |||
|---|---|---|---|---|
| Category | Research Imaging & Microscopy | Research Imaging & Structural Analysis | Research Imaging & Structural Analysis | — |
| Subcategory | Digital Pathology & Whole-Slide Analysis | Conventional or Statistical Baselines | Cell Segmentation | — |
| Company | University of Edinburgh | Research / method authors | Van Valen Lab | — |
| Access mode | Open Source | Confirm distribution and exact release | Research code or publication | — |
| Licence conditions | GPL-3.0 | NOT_INDEPENDENTLY_AUDITED | Check code and model weights separately | — |
| Compute requirements | Standard desktop / workstation (multi-core CPU, optional GPU for deep learning) | Version and data dependent | Check selected checkpoint and runtime; no GPU catalog recommendation | — |
| Biological application | Oncology biomarker quantification, spatial histology analysis, and clinical trials | No registrado | No registrado | — |
| Research workflow | Whole-slide image -> cell segmentation -> phenotyping -> spatial biomarker scoring | No registrado | No registrado | — |
| Evidence level | Peer-reviewed research (Scientific Reports 2017) with thousands of citations | OFFICIAL_DOCUMENTATION | Peer-reviewed primary method | — |
| Commercial eligibility | Permissive open source release | NOT_INDEPENDENTLY_AUDITED | Unknown, requires audit | — |
| Price | Free Open Source | Verify access and licence | Check selected model licence | — |
| Availability ⓘ | Available for Windows, macOS, and Linux | Method paper or official documentation | Public research method/code | — |
| Features | High-performance whole-slide image viewing and annotation across gigapixel files, Machine learning tissue classification (tumor vs stroma vs necrosis), Integration with StarDist and Cellpose for deep learning cell and nuclear segmentation, Extensive scripting API in Groovy and Python for automated cohort analysis | CellProfiler scientific method, Microscopy images and configured classical image-analysis modules, Segmented objects and quantitative image features | Automated cell instance segmentation using detector and Segment Anything models for supported microscopy., Individual cell instance masks | — |
| Entry type | Open Source Software | Classical/statistical scientific method | Research AI model / method | — |
| AI role | Deep Learning Image Segmentation | NON_AI_CLASSICAL | Published biomedical AI method | — |
| Input data | No registrado | Microscopy images and configured classical image-analysis modules | Microscopy images; chosen checkpoint and pixel size | — |
| Output data | No registrado | Segmented objects and quantitative image features | Individual cell instance masks | — |
| Validation | No registrado | Published method scope; no independent BioAtlas execution or benchmark | Requires independent dataset-specific evaluation | — |
| Type | Digital pathology bioimage analysis platform | No registrado | No registrado | — |
| Intended use | No registrado | No registrado | No registrado | — |
| Compatibility | No registrado | No registrado | No registrado | — |
| Manufacturer | University of Edinburgh (Bankhead Lab) | No registrado | No registrado | — |
| Integration evidence | https://qupath.github.io | No registrado | No registrado | — |
| Laboratory handoff | Correlates histological features with genomic data and patient survival curves | No registrado | No registrado | — |